STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioDDethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. (208 aa)    
Predicted Functional Partners:
Rvan_2867
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; KEGG: rpb:RPB_4342 adenosylmethionine--8-amino-7-oxononanoate transaminase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.997
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
 
 0.996
Rvan_1610
PFAM: Methyltransferase type 12; KEGG: mgm:Mmc1_0033 biotin biosynthesis protein BioC.
  
 0.964
Rvan_3461
KEGG: rpe:RPE_3400 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II.
 
  
 0.932
Rvan_0607
8-amino-7-oxononanoate synthase; KEGG: bxe:Bxe_C0016 hypothetical protein; PFAM: aminotransferase class I and II.
 
  
 0.840
Rvan_3500
TIGRFAM: 5-aminolevulinic acid synthase; KEGG: pla:Plav_2905 5-aminolevulinate synthase; PFAM: aminotransferase class I and II.
 
  
 0.816
Rvan_3098
PFAM: aminotransferase class-III; KEGG: mno:Mnod_3410 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.809
Rvan_1117
Cobalbumin biosynthesis protein; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.
     
 0.800
Rvan_2083
PFAM: aminotransferase class-III; KEGG: cag:Cagg_2915 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.779
Rvan_2080
KEGG: geo:Geob_1657 hypothetical protein.
  
  
 0.755
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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