STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1122Ferredoxin like protein, FixX; Could be a 3Fe-4S cluster-containing protein. (98 aa)    
Predicted Functional Partners:
Rvan_1123
Electron-transferring-flavoprotein dehydrogenase; Part of an electron transfer system. Belongs to the ETF-QO/FixC family.
 
 
 0.986
Rvan_1124
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: xau:Xaut_0141 electron transfer flavoprotein alpha/beta-subunit.
 
 0.985
Rvan_1125
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: rec:RHECIAT_PB0000268 electron transfer flavoprotein, beta subunit.
 
 0.979
Rvan_3503
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: pla:Plav_1607 electron transfer flavoprotein alpha subunit.
  
 0.870
Rvan_3504
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: mrd:Mrad2831_2960 electron transfer flavoprotein alpha/beta-subunit.
  
 0.834
Rvan_1121
PFAM: Rubrerythrin; KEGG: rpt:Rpal_2138 hypothetical protein.
 
    0.775
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
  
 0.763
Rvan_3440
PFAM: LRV FeS4 cluster domain protein; KEGG: bbt:BBta_5900 hypothetical protein.
  
    0.663
Rvan_1962
PFAM: NifQ family protein; KEGG: gdj:Gdia_1561 NifQ family protein.
 
  
 0.578
Rvan_3434
KEGG: msl:Msil_3634 hypothetical protein.
 
    0.520
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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