Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1171PFAM: UspA domain-containing protein; KEGG: mes:Meso_4036 hypothetical protein. (168 aa)    
Predicted Functional Partners:
Rvan_0174
PFAM: hypothetical protein; KEGG: pde:Pden_2733 hypothetical protein.
 
     0.817
Rvan_0175
PFAM: protein of unknown function DUF81; KEGG: oan:Oant_4039 hypothetical protein.
 
     0.790
Rvan_2251
KEGG: mes:Meso_0016 hypothetical protein.
  
     0.686
Rvan_1172
PFAM: Scaffold protein Nfu/NifU; nitrogen-fixing NifU domain protein; KEGG: mes:Meso_4037 nitrogen-fixing NifU-like.
     
 0.647
Rvan_1859
PFAM: AsmA family protein; KEGG: azc:AZC_4482 hypothetical protein.
  
     0.615
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.613
Rvan_1174
PFAM: peptidase M22 glycoprotease; KEGG: met:M446_3393 peptidase M22 glycoprotease.
 
   
 0.555
Rvan_0190
KEGG: rpb:RPB_0499 hypothetical protein.
  
     0.525
Rvan_1965
KEGG: pde:Pden_1906 hypothetical protein.
  
     0.515
Rvan_0015
Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; Ada metal-binding domain-containing protein; helix-turn-helix- domain containing protein AraC type; methylguanine DNA methyltransferase ribonuclease domain protein; KEGG: mpo:Mpop_4835 transcriptional regulator, AraC family; SMART: Helix-turn-helix, AraC domain.
  
  
 0.505
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.