Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1237anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: nwi:Nwi_1969 FecR protein. (326 aa)    
Predicted Functional Partners:
Rvan_1238
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rpa:RPA3282 RNA polymerase ECF-type sigma factor, FecI; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
 
 
 0.961
Rvan_0499
KEGG: oca:OCAR_4562 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor.
 
 
 0.919
Rvan_3612
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: TonB-dependent receptor.
 
  
 0.812
Rvan_3561
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: TonB-dependent receptor.
 
  
 0.805
Rvan_1230
KEGG: TonB-dependent receptor plug domain-containing protein; manually curated; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain.
 
  
 0.745
Rvan_3453
KEGG: xau:Xaut_1595 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
  
 
 0.591
Rvan_2516
KEGG: rce:RC1_3856 TonB-dependent hemoglobin; TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor.
 
  
 0.546
Rvan_3472
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bid:Bind_2970 TonB-dependent receptor.
 
  
 0.543
Rvan_1226
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rru:Rru_A2312 TonB-dependent receptor.
 
  
 0.507
Rvan_1724
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: rpt:Rpal_2027 TonB-dependent receptor.
 
  
 0.460
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.