STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1237anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: nwi:Nwi_1969 FecR protein. (326 aa)    
Predicted Functional Partners:
Rvan_1238
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rpa:RPA3282 RNA polymerase ECF-type sigma factor, FecI; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
 
 
 0.959
Rvan_0499
KEGG: oca:OCAR_4562 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor.
 
 
 0.920
Rvan_3612
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: TonB-dependent receptor.
 
  
 0.813
Rvan_3561
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: TonB-dependent receptor.
 
  
 0.806
Rvan_1230
KEGG: TonB-dependent receptor plug domain-containing protein; manually curated; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain.
 
  
 0.739
Rvan_3453
KEGG: xau:Xaut_1595 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
  
 
 0.561
Rvan_2516
KEGG: rce:RC1_3856 TonB-dependent hemoglobin; TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor.
 
  
 0.547
Rvan_3472
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bid:Bind_2970 TonB-dependent receptor.
 
  
 0.544
Rvan_1226
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rru:Rru_A2312 TonB-dependent receptor.
 
  
 0.519
Rvan_3356
Amino acid adenylation domain protein; KEGG: npu:Npun_F3228 non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; transferase hexapeptide repeat containing protein.
  
  
 0.495
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.