STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1238RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rpa:RPA3282 RNA polymerase ECF-type sigma factor, FecI; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein. (168 aa)    
Predicted Functional Partners:
Rvan_1237
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: nwi:Nwi_1969 FecR protein.
 
 
 0.959
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.662
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.609
Rvan_3612
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: TonB-dependent receptor.
 
  
 0.594
Rvan_3561
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: TonB-dependent receptor.
 
  
 0.574
Rvan_1239
KEGG: bmt:BSUIS_A0564 hypothetical protein.
       0.519
Rvan_1686
TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; GAF domain protein; response regulator receiver; KEGG: bra:BRADO6873 two-component sensor histidine kinase; SMART: GAF domain protein; PAC repeat-containing protein; PAS domain containing protein; response regulator receiver.
  
  
 0.460
Rvan_1230
KEGG: TonB-dependent receptor plug domain-containing protein; manually curated; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain.
 
  
 0.456
Rvan_3333
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.451
Rvan_0499
KEGG: oca:OCAR_4562 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor.
 
  
 0.450
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.