STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1259PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: rlg:Rleg_7210 peptidase C14 caspase catalytic subunit P20. (548 aa)    
Predicted Functional Partners:
Rvan_1258
PFAM: OmpA/MotB domain protein; KEGG: msl:Msil_2372 OmpA/MotB domain protein.
 
     0.816
Rvan_1261
KEGG: rlg:Rleg_7212 proteinase inhibitor I4 serpin; PFAM: proteinase inhibitor I4 serpin; SMART: proteinase inhibitor I4 serpin; Belongs to the serpin family.
 
     0.794
Rvan_1260
KEGG: ret:RHE_PE00131 serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap.
       0.780
Rvan_1262
PFAM: peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: mno:Mnod_2951 peptidase C14 caspase catalytic subunit P20.
 
     0.683
Rvan_1242
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: rsp:RSP_4069 caspase-1, P20.
  
     0.586
Rvan_1929
KEGG: oca:OCAR_4052 RND superfamily transporter.
  
     0.491
Rvan_1895
PFAM: protein of unknown function DUF262; KEGG: hypothetical protein.
 
     0.406
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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