Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_1263PFAM: integrase family protein; KEGG: xau:Xaut_2233 integrase family protein; Belongs to the 'phage' integrase family. (392 aa)    
Predicted Functional Partners:
Rvan_1051
PFAM: protein of unknown function DUF927; KEGG: esa:ESA_03018 hypothetical protein.
 
  
 0.609
Rvan_2789
PFAM: protein of unknown function DUF927; KEGG: zinc-binding domain of primase-helicase family protein.
 
  
 0.609
Rvan_2484
PFAM: protein of unknown function DUF927; KEGG: lpf:lpl1073 hypothetical protein.
 
  
 0.546
Rvan_1264
PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: mno:Mnod_5299 ErfK/YbiS/YcfS/YnhG family protein.
 
     0.518
Rvan_1477
Hypothetical protein; KEGG: pca:Pcar_1822 putative DNA primase.
 
     0.491
Rvan_2042
KEGG: mno:Mnod_5075 hypothetical protein.
 
     0.456
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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