Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1287PFAM: OstA family protein; KEGG: rpt:Rpal_0049 OstA family protein. (250 aa)    
Predicted Functional Partners:
Rvan_1286
KEGG: bra:BRADO0114 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.974
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
 
 0.929
Rvan_1288
PFAM: protein of unknown function DUF1239; KEGG: hypothetical protein.
 
   
 0.866
Rvan_2533
KEGG: msl:Msil_0025 flagellar basal body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.717
Rvan_1289
KEGG: pla:Plav_0196 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.
       0.703
Rvan_1938
Hypothetical protein; Manually curated; KEGG: oca:OCAR_4675 hypothetical protein.
  
     0.700
Rvan_1039
PFAM: nitrogen-fixing NifU domain protein; KEGG: azc:AZC_0943 NifU-like protein.
  
     0.695
Rvan_1285
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.679
Rvan_0909
KEGG: met:M446_2502 hypothetical protein.
 
     0.641
Rvan_1915
PFAM: protein of unknown function DUF1153; KEGG: azc:AZC_1033 hypothetical protein.
  
     0.633
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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