STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1306KEGG: pla:Plav_3330 hypothetical protein. (391 aa)    
Predicted Functional Partners:
Rvan_0075
KEGG: pla:Plav_3269 hypothetical protein.
  
     0.704
Rvan_2883
PFAM: protein of unknown function DUF583; KEGG: lch:Lcho_3739 outer membrane adhesin like proteiin.
  
     0.665
Rvan_0627
KEGG: oca:OCAR_4056 nuclease; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein).
  
     0.649
Rvan_2170
KEGG: pla:Plav_3493 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat-containing protein; SMART: Pyrrolo-quinoline quinone beta-propeller repeat.
  
     0.647
Rvan_0131
PFAM: protein of unknown function DUF1457; KEGG: pla:Plav_0872 hypothetical protein.
  
     0.645
Rvan_2356
KEGG: pla:Plav_0930 17 kDa surface antigen.
  
     0.635
Rvan_1713
KEGG: rru:Rru_A0644 hypothetical protein.
  
     0.624
Rvan_1859
PFAM: AsmA family protein; KEGG: azc:AZC_4482 hypothetical protein.
  
    0.593
purM
TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: mes:Meso_1966 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein.
       0.589
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
       0.589
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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