Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Rvan_1316KEGG: pla:Plav_1958 hypothetical protein. (541 aa)    
Predicted Functional Partners:
Rvan_1315
PFAM: protein of unknown function DUF459; KEGG: msl:Msil_3880 protein of unknown function DUF459.
 
     0.900
Rvan_0383
PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpe:RPE_4909 hypothetical protein.
  
 
 0.452
Rvan_0919
KEGG: cbr:CBG02561 Hypothetical protein CBG02561.
  
 
 0.452
Rvan_2129
PFAM: Sel1 domain protein repeat-containing protein; KEGG: bja:blr0529 hypothetical protein.
  
 
 0.452
Rvan_2224
PFAM: Hep_Hag repeat-containing protein; KEGG: hmg:100209204 similar to predicted protein.
  
 
 0.452
Rvan_3633
KEGG: pvx:PVX_092975 erythrocyte binding protein 1.
  
 
 0.452
Rvan_0829
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: syf:Synpcc7942_1400 endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10.
   
 
 0.449
Rvan_2310
KEGG: xau:Xaut_1758 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
   
   0.445
Rvan_2311
PFAM: protein of unknown function DUF214; KEGG: mno:Mnod_1778 protein of unknown function DUF214.
   
   0.445
Rvan_1314
TIGRFAM: lytic murein transglycosylase; KEGG: psa:PST_3772 membrane-bound lytic murein transglycosylase, putative.
       0.432
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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