STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1380PFAM: polysaccharide deacetylase; KEGG: nwi:Nwi_1710 polysaccharide deacetylase. (361 aa)    
Predicted Functional Partners:
Rvan_1918
PFAM: polysaccharide deacetylase; KEGG: xau:Xaut_1324 polysaccharide deacetylase.
  
     0.766
Rvan_2148
KEGG: cak:Caul_0228 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; glycoside hydrolase family 18; glycosyl transferase family 2; SMART: chitinase II.
 
  
0.599
Rvan_3526
KEGG: mno:Mnod_2548 general secretion pathway protein E.
 
  
 0.534
Rvan_1381
KEGG: alv:Alvin_0420 hypothetical protein.
       0.496
Rvan_0170
PFAM: glycosyl transferase family 2; KEGG: pla:Plav_0424 glycosyl transferase family protein.
  
  
 0.472
Rvan_0417
PFAM: glycosyl transferase family 2; KEGG: glycosyl transferase family 2.
  
  
 0.472
Rvan_3021
KEGG: cyn:Cyan7425_4598 hopene-associated glycosyltransferase HpnB; TIGRFAM: hopene-associated glycosyltransferase HpnB; PFAM: glycosyl transferase family 2.
  
  
 0.472
Rvan_3167
KEGG: mno:Mnod_7359 ceramide glucosyltransferase.
  
  
 0.472
Rvan_1379
SMART: AAA ATPase; KEGG: AAA ATPase.
       0.433
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.