STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1409PFAM: Relaxase/mobilization nuclease family protein; KEGG: mmr:Mmar10_2322 relaxase/mobilization nuclease family protein. (402 aa)    
Predicted Functional Partners:
Rvan_0219
KEGG: atc:AGR_C_39 hypothetical protein; TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
 
 0.813
Rvan_1410
PFAM: TRAG family protein; KEGG: sjp:SJA_P2-00410 conjugal transfer protein TraG.
 
   
 0.806
Rvan_1408
PFAM: mobilisation protein; KEGG: bad:BAD_1270 hypothetical protein.
       0.775
Rvan_1443
PFAM: domain of unknown function DUF1738; KEGG: xau:Xaut_0801 hypothetical protein.
 
     0.630
Rvan_0003
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.568
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.532
Rvan_1452
KEGG: mlo:mlr8507 hypothetical protein.
  
     0.503
Rvan_1411
Hypothetical protein; KEGG: acetyltransferase.
       0.477
Rvan_2590
KEGG: oan:Oant_0479 hypothetical protein.
  
     0.464
Rvan_1407
KEGG: olu:OSTLU_28747 predicted protein.
       0.401
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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