Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1423PFAM: Domain of unknown function P63C; KEGG: dvm:DvMF_1646 phage protein. (342 aa)    
Predicted Functional Partners:
Rvan_1422
KEGG: mdi:METDI1403 hypothetical protein.
 
     0.835
Rvan_1424
Histone H1; KEGG: cqu:CpipJ_CPIJ012377 histone H1.
       0.547
Rvan_1425
KEGG: pgu:PGUG_00301 hypothetical protein.
       0.546
Rvan_1456
PFAM: plasmid encoded RepA protein; KEGG: met:M446_5948 plasmid encoded RepA protein.
  
     0.435
Rvan_1426
KEGG: pkn:PKH_141220 hypothetical protein.
       0.411
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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