STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1472KEGG: psb:Psyr_4603 peptidase; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (209 aa)    
Predicted Functional Partners:
Rvan_1470
KEGG: syf:Synpcc7942_0722 hypothetical protein.
       0.476
Rvan_1468
PFAM: HNH endonuclease; KEGG: bgl:bglu_1g15350 hypothetical protein.
  
    0.460
Rvan_1471
PFAM: YqaJ viral recombinase family; KEGG: mno:Mnod_2639 phage-related protein endonuclease-like protein.
       0.458
Rvan_1465
KEGG: scl:sce0608 hypothetical protein.
       0.449
Rvan_1466
Hypothetical protein; KEGG: cme:CMT610C methylenetetrahydrofolate reductase.
       0.449
Rvan_1467
Hypothetical protein; KEGG: dac:Daci_2276 XRE family transcriptional regulator.
       0.449
Rvan_1469
KEGG: hch:HCH_05691 hypothetical protein.
       0.449
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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