Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_1513PFAM: Circadian clock protein KaiC central region; KEGG: sjp:SJA_C2-00830 circadian clock protein KaiC; SMART: AAA ATPase. (495 aa)    
Predicted Functional Partners:
Rvan_1511
KEGG: msl:Msil_2020 multi-sensor signal transduction histidine kinase; PFAM: GAF domain protein; PAS fold-2 domain protein; Phytochrome central region domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: GAF domain protein; ATP-binding region ATPase domain protein.
   
 
 0.795
Rvan_2510
KEGG: rpc:RPC_2870 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
   
 
 0.795
Rvan_1512
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: rpe:RPE_3627 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; response regulator receiver.
 
   
 0.750
Rvan_1516
PFAM: methyltransferase small; KEGG: mrd:Mrad2831_4912 methyltransferase small.
 
     0.518
Rvan_1514
Domain of unknown function DUF1989; KEGG: pla:Plav_3249 hypothetical protein; manually curated; PFAM: Domain of unknown function DUF1989.
       0.421
Rvan_1515
PFAM: protein of unknown function YqcI/YcgG; KEGG: rru:Rru_A3044 hypothetical protein.
       0.421
Rvan_2100
PFAM: major facilitator superfamily MFS_1; KEGG: bbt:BBta_2785 major facilitator superfamily permease.
  
     0.414
Rvan_1268
PFAM: Patatin; KEGG: met:M446_5259 patatin.
  
     0.404
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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