STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1645KEGG: aeh:Mlg_1600 hypothetical protein. (419 aa)    
Predicted Functional Partners:
Rvan_1646
PFAM: GTP-binding protein HSR1-related; KEGG: tkm:TK90_0656 GTP-binding protein HSR1-related protein.
 
     0.953
Rvan_3475
PFAM: protein of unknown function DUF1920; KEGG: rsq:Rsph17025_3856 hypothetical protein.
  
     0.608
Rvan_0256
PFAM: protein of unknown function DUF214; KEGG: bbt:BBta_7062 putative ABC transporter, permease protein.
  
     0.469
Rvan_3488
KEGG: rpd:RPD_2508 hypothetical protein.
  
     0.425
vapC-2
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.424
Rvan_3224
PFAM: Protein of unknown function DUF2191; KEGG: protein of unknown function DUF2191.
  
     0.410
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.