STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1651KEGG: mno:Mnod_2705 BFD domain protein (2Fe-2S)-binding domain protein; manually curated; PFAM: BFD domain protein [2Fe-2S]-binding domain protein. (69 aa)    
Predicted Functional Partners:
Rvan_1652
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
  
 
 0.927
Rvan_1535
TIGRFAM: TonB family protein; KEGG: met:M446_0507 TonB family protein.
  
  
 0.452
Rvan_1552
TIGRFAM: TonB family protein; KEGG: nha:Nham_3641 TonB-like.
  
  
 0.452
Rvan_2519
TIGRFAM: TonB family protein; KEGG: nwi:Nwi_2038 TonB like protein.
  
  
 0.452
Rvan_3302
KEGG: putative TolA.
  
  
 0.452
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.