Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_1654PFAM: SCP-like extracellular; KEGG: SCP-like extracellular. (220 aa)    
Predicted Functional Partners:
Rvan_3038
PFAM: SCP-like extracellular; KEGG: eba:ebA3441 hypothetical protein.
  
     0.743
Rvan_1744
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; Diverse 7TM receptor transmembrane region; PAS fold-3 domain protein; KEGG: diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s); SMART: EAL domain protein; GGDEF domain containing protein.
  
   
 0.527
kup-2
Potassium transporter; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.
       0.523
Rvan_0383
PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpe:RPE_4909 hypothetical protein.
  
    0.495
Rvan_0919
KEGG: cbr:CBG02561 Hypothetical protein CBG02561.
  
    0.495
Rvan_2129
PFAM: Sel1 domain protein repeat-containing protein; KEGG: bja:blr0529 hypothetical protein.
  
    0.495
Rvan_2224
PFAM: Hep_Hag repeat-containing protein; KEGG: hmg:100209204 similar to predicted protein.
  
    0.495
Rvan_3633
KEGG: pvx:PVX_092975 erythrocyte binding protein 1.
  
    0.495
Rvan_1653
Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
  
    0.484
Rvan_1260
KEGG: ret:RHE_PE00131 serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap.
  
 
 0.447
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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