STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1663PFAM: Rhomboid family protein; KEGG: bbt:BBta_7801 hypothetical protein. (259 aa)    
Predicted Functional Partners:
Rvan_1664
PFAM: alpha/beta hydrolase fold; KEGG: mxa:MXAN_6875 alpha/beta fold family hydrolase.
  
    0.738
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.562
Rvan_1665
PFAM: heat shock protein Hsp20; KEGG: bja:blr7961 HspC2 heat shock protein; Belongs to the small heat shock protein (HSP20) family.
       0.514
Rvan_1588
KEGG: rpd:RPD_4180 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.503
Rvan_1662
KEGG: lbc:LACBIDRAFT_294095 hypothetical protein.
       0.477
Rvan_2306
PFAM: protein of unknown function DUF201; KEGG: rpe:RPE_0617 hypothetical protein.
  
    0.466
Rvan_1010
HflK protein; HflC and HflK could encode or regulate a protease.
   
 0.435
Rvan_1011
HflC protein; HflC and HflK could regulate a protease.
   
 0.435
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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