Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_1683KEGG: rpt:Rpal_2944 hemimethylated DNA binding protein; TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region. (118 aa)    
Predicted Functional Partners:
Rvan_2313
KEGG: azc:AZC_4463 hypothetical protein.
 
     0.657
Rvan_1682
PFAM: HpcH/HpaI aldolase; KEGG: xau:Xaut_3870 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.640
Rvan_0547
PFAM: Uncharacterised conserved protein UCP032146; KEGG: rhi:NGR_c02250 hypothetical protein; Belongs to the UPF0262 family.
  
     0.589
Rvan_1287
PFAM: OstA family protein; KEGG: rpt:Rpal_0049 OstA family protein.
  
     0.522
Rvan_1707
PFAM: GcrA cell cycle regulator; KEGG: ret:RHE_CH00515 hypothetical protein.
  
     0.512
Rvan_2610
PFAM: NLP/P60 protein; KEGG: mdi:METDI0995 hypothetical protein.
  
   
 0.465
Rvan_3486
PFAM: protein of unknown function DUF583; KEGG: rsq:Rsph17025_1854 hypothetical protein.
  
     0.457
psd
Phosphatidylserine decarboxylase related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
      
 0.437
grpE
GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...]
   
  
 0.433
Rvan_1039
PFAM: nitrogen-fixing NifU domain protein; KEGG: azc:AZC_0943 NifU-like protein.
  
   
 0.423
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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