STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1707PFAM: GcrA cell cycle regulator; KEGG: ret:RHE_CH00515 hypothetical protein. (158 aa)    
Predicted Functional Partners:
Rvan_2376
PFAM: GcrA cell cycle regulator; KEGG: xau:Xaut_1217 GcrA cell cycle regulator.
  
     0.766
atpF
H+transporting two-sector ATPase B/B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.603
rpoD
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 
 0.593
Rvan_2729
KEGG: atc:AGR_L_1350 hypothetical protein.
  
     0.570
Rvan_1156
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pzu:PHZ_c0577 modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
  
   
 0.565
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
    
 
 0.531
Rvan_1683
KEGG: rpt:Rpal_2944 hemimethylated DNA binding protein; TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region.
  
     0.512
Rvan_3199
PFAM: protein of unknown function DUF448; KEGG: bid:Bind_1048 hypothetical protein.
  
     0.512
Rvan_3486
PFAM: protein of unknown function DUF583; KEGG: rsq:Rsph17025_1854 hypothetical protein.
  
     0.460
Rvan_1965
KEGG: pde:Pden_1906 hypothetical protein.
  
     0.443
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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