STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1740PFAM: Invasion associated locus B family protein; KEGG: oca:OCAR_4683 invasion associated locus B. (174 aa)    
Predicted Functional Partners:
Rvan_1371
KEGG: oan:Oant_2153 hypothetical protein.
  
     0.775
Rvan_1935
KEGG: bqu:BQ07600 hypothetical protein.
  
     0.775
Rvan_0917
PFAM: protein of unknown function DUF1150; KEGG: oca:OCAR_4463 hypothetical protein.
  
     0.774
Rvan_0922
KEGG: rpc:RPC_4252 hypothetical protein.
  
     0.774
Rvan_0926
Hypothetical protein; KEGG: mno:Mnod_3620 flagellar export protein FliJ.
  
     0.774
Rvan_1744
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; Diverse 7TM receptor transmembrane region; PAS fold-3 domain protein; KEGG: diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s); SMART: EAL domain protein; GGDEF domain containing protein.
 
     0.773
Rvan_3307
PFAM: Invasion associated locus B family protein; KEGG: azc:AZC_1224 hypothetical protein.
  
     0.773
Rvan_0447
KEGG: rpe:RPE_1474 hypothetical protein.
  
     0.770
Rvan_0615
PFAM: protein of unknown function DUF1036; KEGG: rpb:RPB_1424 hypothetical protein.
  
     0.770
Rvan_0909
KEGG: met:M446_2502 hypothetical protein.
  
     0.768
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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