Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_1763KEGG: net:Neut_2553 conjugal transfer protein TrbD. (95 aa)    
Predicted Functional Partners:
Rvan_2019
KEGG: helicase domain protein; PFAM: helicase domain protein; SMART: helicase domain protein.
  
 
 0.794
Rvan_1764
PFAM: Conjugal transfer protein TrbC; KEGG: bam:Bamb_6634 conjugal transfer protein TrbC.
     
 0.789
Rvan_1765
P-type conjugative transfer ATPase TrbB; KEGG: net:Neut_2555 type II secretion system protein E; TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E.
     
 0.789
Rvan_1762
KEGG: net:Neut_2552 CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase.
     
 0.787
Rvan_1760
KEGG: kpe:KPK_1289 P-type conjugative transfer protein TrbL; TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein.
       0.779
Rvan_1761
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: kpe:KPK_1290 P-type conjugative transfer protein TrbJ.
       0.779
Rvan_1759
KEGG: hna:Hneap_1665 conjugal transfer protein.
     
 0.618
Rvan_1758
KEGG: eba:p2B6 conjugal transfer protein TrbG; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX.
     
 0.583
Rvan_1757
PFAM: conjugation TrbI family protein; KEGG: net:Neut_2539 conjugation TrbI family protein.
     
 0.416
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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