Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1776KEGG: net:Neut_2577 transfer origin protein, TraL. (251 aa)    
Predicted Functional Partners:
Rvan_1777
KEGG: net:Neut_2576 hypothetical protein.
       0.773
Rvan_1775
KEGG: ava:Ava_3199 hypothetical protein.
       0.741
Rvan_1778
PFAM: integrase family protein; KEGG: rpt:Rpal_3817 integrase family protein.
       0.635
Rvan_2659
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: xau:Xaut_1837 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.
  
 
 0.596
Rvan_3144
KEGG: met:M446_0814 nuclease; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease.
  
 
 0.596
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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