Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_1804KEGG: bbt:BBta_1292 hypothetical protein. (301 aa)    
Predicted Functional Partners:
Rvan_1805
KEGG: xau:Xaut_2122 hypothetical protein.
 
     0.958
Rvan_1807
KEGG: xau:Xaut_2124 hypothetical protein.
 
     0.894
Rvan_1803
Hypothetical protein; KEGG: xau:Xaut_2120 putative signal peptide.
 
     0.830
Rvan_1806
KEGG: xau:Xaut_2123 HupE/UreJ protein.
 
     0.802
Rvan_1802
PFAM: Spermine synthase; KEGG: xau:Xaut_2119 spermine synthase.
 
   0.726
Rvan_3559
KEGG: xau:Xaut_3410 TPR repeat-containing protein; TIGRFAM: cytochrome C family protein; SMART: Tetratricopeptide repeat.
  
 
   0.511
Rvan_3560
PFAM: sulfatase; KEGG: ava:Ava_0111 sulfatase.
 
     0.510
Rvan_1808
PFAM: peptidase A24A prepilin type IV; KEGG: xau:Xaut_2105 peptidase A24A prepilin type IV.
       0.488
Rvan_2750
PFAM: globin; KEGG: globin; Belongs to the globin family.
  
     0.437
Rvan_3344
Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.436
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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