STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1817KEGG: gsu:GSU1777 hypothetical protein. (184 aa)    
Predicted Functional Partners:
Rvan_1816
PFAM: type II secretion system protein G; KEGG: gspG2; general secretion pathway protein G.
 
  
 
0.983
Rvan_1818
PFAM: type II and III secretion system protein; Secretin/TonB short domain; KEGG: gur:Gura_1929 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.958
Rvan_1815
KEGG: pca:Pcar_0595 hypothetical protein.
 
     0.953
Rvan_1809
KEGG: xau:Xaut_2109 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G.
 
  
  0.932
Rvan_1811
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: gspE; general secretion pathway protein E.
 
 
 0.840
Rvan_1810
PFAM: Type II secretion system F domain; KEGG: ppd:Ppro_2512 type II secretion system protein.
 
  
 0.771
Rvan_1819
Hypothetical protein; KEGG: afv:AFLA_057220 translation elongation factor G2, putative.
       0.704
Rvan_2435
KEGG: rpe:RPE_3377 DNA processing protein DprA, putative; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein.
  
  
 0.506
Rvan_3341
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
    0.468
gluQ
Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.
  
     0.423
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.