Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rvan_1859PFAM: AsmA family protein; KEGG: azc:AZC_4482 hypothetical protein. (1213 aa)    
Predicted Functional Partners:
Rvan_0447
KEGG: rpe:RPE_1474 hypothetical protein.
  
     0.768
Rvan_0075
KEGG: pla:Plav_3269 hypothetical protein.
 
   
 0.766
Rvan_3397
KEGG: bid:Bind_0732 hypothetical protein.
  
     0.763
Rvan_1672
KEGG: rpt:Rpal_2206 hypothetical protein.
  
     0.758
Rvan_2348
KEGG: nwi:Nwi_1148 hypothetical protein.
  
     0.735
Rvan_2018
KEGG: bid:Bind_3592 hypothetical protein.
  
     0.729
Rvan_1033
KEGG: oca:OCAR_5519 hypothetical protein.
  
   
 0.728
Rvan_0922
KEGG: rpc:RPC_4252 hypothetical protein.
  
     0.713
Rvan_1288
PFAM: protein of unknown function DUF1239; KEGG: hypothetical protein.
  
     0.710
Rvan_1371
KEGG: oan:Oant_2153 hypothetical protein.
  
     0.708
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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