STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1929KEGG: oca:OCAR_4052 RND superfamily transporter. (798 aa)    
Predicted Functional Partners:
Rvan_2099
KEGG: oca:OCAR_7278 hypothetical protein.
  
     0.725
Rvan_1672
KEGG: rpt:Rpal_2206 hypothetical protein.
  
     0.663
Rvan_3397
KEGG: bid:Bind_0732 hypothetical protein.
  
     0.631
Rvan_1967
PFAM: AIG2 family protein; KEGG: bra:BRADO1352 hypothetical protein.
  
     0.576
Rvan_0872
PFAM: phosphopantetheine-binding; KEGG: rru:Rru_A0044 acyl carrier protein.
 
     0.573
Rvan_1930
KEGG: bja:blr4677 hypothetical protein.
       0.568
Rvan_0320
PFAM: Methyltransferase type 12; KEGG: rlg:Rleg_1274 hypothetical protein.
  
     0.532
Rvan_1268
PFAM: Patatin; KEGG: met:M446_5259 patatin.
 
     0.532
Rvan_0961
Hypothetical protein; KEGG: cli:Clim_2385 OmpA/MotB domain protein.
  
     0.514
Rvan_0447
KEGG: rpe:RPE_1474 hypothetical protein.
  
     0.508
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.