STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1936PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: fumarate reductase/succinate dehydrogenase flavoprotein domain protein. (388 aa)    
Predicted Functional Partners:
Rvan_1935
KEGG: bqu:BQ07600 hypothetical protein.
 
     0.885
Rvan_2958
PFAM: Extracellular ligand-binding receptor; KEGG: mno:Mnod_1164 extracellular ligand-binding receptor.
  
  
 0.720
Rvan_0737
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
 
 0.584
Rvan_2903
PFAM: NUDIX hydrolase; KEGG: ana:all7351 hypothetical protein.
   
  
 0.547
Rvan_0152
PFAM: fatty acid hydroxylase; KEGG: psa:PST_3871 beta-carotene hydroxylase.
   
 
 0.473
Rvan_0861
PFAM: fatty acid hydroxylase; KEGG: sal:Sala_3136 sterol desaturase.
   
 
 0.473
Rvan_0179
PFAM: isochorismatase hydrolase; KEGG: met:M446_0481 isochorismatase hydrolase.
 
  
 0.468
Rvan_1664
PFAM: alpha/beta hydrolase fold; KEGG: mxa:MXAN_6875 alpha/beta fold family hydrolase.
 
  
 0.466
Rvan_1934
PFAM: Clp domain protein; KEGG: gga:396544 nascent polypeptide-associated complex alpha subunit.
     
 0.466
Rvan_2087
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: msl:Msil_2480 short-chain dehydrogenase/reductase SDR.
 
  
 0.439
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.