STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1945PFAM: SNARE associated Golgi protein; KEGG: pla:Plav_0303 SNARE associated Golgi protein. (254 aa)    
Predicted Functional Partners:
Rvan_2393
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: pla:Plav_0304 pyridine nucleotide-disulphide oxidoreductase dimerisation region.
     0.976
Rvan_0653
KEGG: bbt:BBta_0398 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region.
      0.905
Rvan_1330
KEGG: rce:RC1_0122 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region.
      0.905
Rvan_1944
PFAM: Radical SAM domain protein; KEGG: eli:ELI_00345 radical SAM domain-containing protein.
 
   
 0.904
Rvan_2328
Glutathione-disulfide reductase; Maintains high levels of reduced glutathione.
      0.904
Rvan_1943
KEGG: bbt:BBta_3386 putative selenide, water dikinase; TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
     0.750
Rvan_0082
PFAM: glycosyl transferase family 2; KEGG: pla:Plav_0708 glycosyl transferase family protein.
 
   
 0.740
Rvan_0084
PFAM: Protein of unknown function DUF2064; KEGG: pla:Plav_0709 hypothetical protein.
 
     0.736
Rvan_1946
KEGG: bbt:BBta_0260 GTP-binding protein TypA/BipA (tyrosine phosphorylated protein A); TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein.
       0.559
Rvan_1941
KEGG: pzu:PHZ_p0115 heat shock protein DnaJ, N-terminal; PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.
   
   0.446
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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