Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_1950KEGG: lch:Lcho_1428 hypothetical protein. (196 aa)    
Predicted Functional Partners:
Rvan_1951
PFAM: globin; KEGG: bbt:BBta_5890 putative hemoglobin protein (truncated hemoglobin).
 
     0.881
Rvan_1948
KEGG: rpe:RPE_4369 nitrogenase-associated protein; TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; Belongs to the ArsC family.
 
     0.818
Rvan_3434
KEGG: msl:Msil_3634 hypothetical protein.
 
     0.797
Rvan_1960
PFAM: protein of unknown function DUF683; KEGG: xau:Xaut_0095 hypothetical protein.
 
     0.792
Rvan_3438
PFAM: NifZ family protein; KEGG: msl:Msil_3640 NifZ family protein.
  
     0.773
Rvan_3441
Hypothetical protein; KEGG: rpt:Rpal_5108 tetratricopeptide TPR_2 repeat protein.
  
     0.766
Rvan_3440
PFAM: LRV FeS4 cluster domain protein; KEGG: bbt:BBta_5900 hypothetical protein.
  
     0.763
Rvan_0574
KEGG: msl:Msil_3525 hypothetical protein.
  
     0.742
Rvan_3436
KEGG: rpc:RPC_4465 hypothetical protein.
 
     0.728
Rvan_1959
Nitrogen fixation protein; KEGG: afr:AFE_1514 hypothetical protein; TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269.
 
     0.702
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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