Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_1961TIGRFAM: ferredoxin III, nif-specific; KEGG: bbt:BBta_5917 ferredoxin-3 (ferredoxin III) (FdIII). (102 aa)    
Predicted Functional Partners:
Rvan_1962
PFAM: NifQ family protein; KEGG: gdj:Gdia_1561 NifQ family protein.
 
    0.874
Rvan_1958
Nitrogen fixation protein NifX; KEGG: rpb:RPB_0974 dinitrogenase iron-molybdenum cofactor biosynthesis; TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein.
 
    0.873
Rvan_1959
Nitrogen fixation protein; KEGG: afr:AFE_1514 hypothetical protein; TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269.
 
    0.872
Rvan_1957
TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; KEGG: mca:MCA0234 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.
 
    0.868
Rvan_1956
KEGG: mca:MCA0233 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; BFD domain protein [2Fe-2S]-binding domain protein; Belongs to the NifD/NifK/NifE/NifN family.
 
    0.867
Rvan_1960
PFAM: protein of unknown function DUF683; KEGG: xau:Xaut_0095 hypothetical protein.
 
     0.852
Rvan_1955
Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
 
    0.845
Rvan_1954
TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; KEGG: msl:Msil_3631 nitrogenase molybdenum-iron protein alpha chain; PFAM: oxidoreductase/nitrogenase component 1.
 
    0.825
Rvan_3437
Nitrogen fixation protein FixT; KEGG: rpe:RPE_4535 NifT/FixU family protein; TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein.
 
    0.799
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
  
    0.796
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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