STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1976PFAM: short-chain dehydrogenase/reductase SDR; KEGG: short-chain dehydrogenase/reductase SDR. (292 aa)    
Predicted Functional Partners:
Rvan_0553
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl01_3946 short-chain dehydrogenase/reductase SDR.
  
  
 
0.915
Rvan_1975
PFAM: histone deacetylase superfamily; KEGG: histone deacetylase.
   
   0.791
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.772
Rvan_1977
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bmr:BMI_I415 enoyl-CoA hydratase.
  
  0.621
Rvan_3560
PFAM: sulfatase; KEGG: ava:Ava_0111 sulfatase.
   
 
 0.584
Rvan_1978
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: mno:Mnod_2841 acyl-CoA dehydrogenase domain protein.
  
  0.492
Rvan_0558
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: rce:RC1_1743 fatty acid oxidation complex alpha subunit.
 
 0.488
Rvan_0937
KEGG: mag:amb2105 S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase.
  
 
 0.472
Rvan_1644
KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin); PFAM: glutamine amidotransferase class-II; glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein.
      
 0.428
dxs
Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.417
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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