STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1981PFAM: MaoC domain protein dehydratase; KEGG: azo:azo0191 hypothetical protein. (156 aa)    
Predicted Functional Partners:
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
       0.773
Rvan_0122
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.645
Rvan_0297
Catalase; KEGG: rru:Rru_A2489 catalase; PFAM: Catalase related subgroup; Catalase domain protein.
   
 0.645
Rvan_1978
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: mno:Mnod_2841 acyl-CoA dehydrogenase domain protein.
 
 0.634
Rvan_0558
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: rce:RC1_1743 fatty acid oxidation complex alpha subunit.
  
 0.597
Rvan_0849
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: dar:Daro_1547 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.597
Rvan_2899
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: rce:RC1_0547 peroxisomal bifunctional enzyme.
  
 0.597
Rvan_2881
KEGG: hne:HNE_2613 hypothetical protein; TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59.
  
  
 0.550
Rvan_1282
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: rce:RC1_1946 acyl-CoA dehydrogenase, putative.
 
 0.538
Rvan_1977
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bmr:BMI_I415 enoyl-CoA hydratase.
  
 0.510
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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