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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1985PFAM: PRC-barrel domain protein; KEGG: ret:RHE_CH00851 hypothetical protein. (207 aa)    
Predicted Functional Partners:
Rvan_3393
PFAM: PRC-barrel domain protein; KEGG: atc:AGR_C_723 hypothetical protein.
 
     0.774
Rvan_1986
PFAM: protein of unknown function DUF892; KEGG: rpb:RPB_1737 hypothetical protein.
 
     0.640
Rvan_2507
KEGG: mlo:mlr3700 two-component response regulator; PFAM: response regulator receiver; Sigma-70 region 4 type 2; SMART: response regulator receiver.
 
    0.630
Rvan_3392
PFAM: CsbD family protein; KEGG: noc:Noc_0274 CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
 
     0.474
Rvan_0057
KEGG: ara:Arad_9154 outer membrane protein.
  
     0.409
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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