STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1986PFAM: protein of unknown function DUF892; KEGG: rpb:RPB_1737 hypothetical protein. (163 aa)    
Predicted Functional Partners:
Rvan_0760
PFAM: protein of unknown function DUF892; KEGG: rpc:RPC_1900 hypothetical protein.
 
  
0.939
Rvan_2298
PFAM: Stress-induced protein, KGG, repeat; KEGG: bid:Bind_3101 hypothetical protein.
  
  
 0.875
Rvan_0633
DNA ligase D; KEGG: mes:Meso_1150 ATP dependent DNA ligase; TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; DNA primase small subunit.
 
    0.746
Rvan_1985
PFAM: PRC-barrel domain protein; KEGG: ret:RHE_CH00851 hypothetical protein.
 
     0.640
ku
Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
    0.625
Rvan_2194
KEGG: bid:Bind_3833 hypothetical protein.
 
  
 0.578
Rvan_0122
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
    0.575
Rvan_1556
PFAM: Stress-induced protein, KGG, repeat; KEGG: gox:GOX2079 hypothetical protein.
  
  
 0.523
Rvan_1133
TIGRFAM: glycogen debranching enzyme GlgX; 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; KEGG: glycogen debranching enzyme GlgX; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
  
  
 0.502
Rvan_0297
Catalase; KEGG: rru:Rru_A2489 catalase; PFAM: Catalase related subgroup; Catalase domain protein.
  
    0.493
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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