STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1993Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. (402 aa)    
Predicted Functional Partners:
Rvan_1039
PFAM: nitrogen-fixing NifU domain protein; KEGG: azc:AZC_0943 NifU-like protein.
  
 0.991
Rvan_0291
PFAM: SirA-like domain-containing protein; KEGG: sil:SPO1895 SirA family protein; Belongs to the sulfur carrier protein TusA family.
   
 0.977
Rvan_0606
PFAM: SirA-like domain-containing protein; KEGG: alv:Alvin_2600 SirA family protein; Belongs to the sulfur carrier protein TusA family.
   
 0.977
Rvan_0129
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: pla:Plav_3646 UBA/ThiF-type NAD/FAD binding protein.
   
 0.974
Rvan_1962
PFAM: NifQ family protein; KEGG: gdj:Gdia_1561 NifQ family protein.
 
 0.970
Rvan_2873
Transcriptional regulator, BadM/Rrf2 family; KEGG: pzu:PHZ_c1722 predicted transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074.
 
  
 0.935
Rvan_1992
PFAM: nitrogen-fixing NifU domain protein; KEGG: xau:Xaut_0107 NifU domain-containing protein.
 
 
 0.932
Rvan_2942
KEGG: rhodanese domain-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
  
 0.922
Rvan_2874
Cysteine desulfurase; KEGG: smd:Smed_1469 aminotransferase class V; PFAM: aminotransferase class V.
  
  
 
0.919
Rvan_1991
KEGG: azc:AZC_3409 iron-sulfur cluster assembly accessory protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
 
  
 0.874
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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