STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2010KEGG: scl:sce6240 hypothetical protein. (283 aa)    
Predicted Functional Partners:
Rvan_1139
Protein of unknown function DUF2126; KEGG: rpe:RPE_0086 transglutaminase domain-containing protein; PFAM: Protein of unknown function DUF2126; transglutaminase domain protein; transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein.
 
     0.662
Rvan_2297
KEGG: azl:AZL_001170 hypothetical protein; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein.
  
     0.636
hslU
Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.
       0.542
hslV
20S proteasome A and B subunits; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
       0.542
Rvan_3082
PFAM: GCN5-related N-acetyltransferase; KEGG: npu:Npun_F0556 GCN5-related N-acetyltransferase.
  
    0.528
Rvan_0922
KEGG: rpc:RPC_4252 hypothetical protein.
  
 
 0.487
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
 
 0.487
Rvan_0485
Acyltransferase, WS/DGAT/MGAT; KEGG: asa:ASA_2036 hypothetical protein; TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: protein of unknown function UPF0089.
   
    0.465
Rvan_0724
PFAM: protein of unknown function UCP012641; KEGG: azl:AZL_c00190 hypothetical protein.
 
     0.462
Rvan_2743
PFAM: membrane-bound metal-dependent hydrolase; KEGG: membrane-bound metal-dependent hydrolase.
  
    0.427
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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