STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2091KEGG: rpt:Rpal_2588 hypothetical protein. (30 aa)    
Predicted Functional Partners:
Rvan_2090
Hypothetical protein; KEGG: fsu:Fisuc_0157 cupin 2 conserved barrel domain protein.
       0.773
Rvan_2089
Homoserine O-acetyltransferase; KEGG: msl:Msil_2478 hypothetical protein; PFAM: alpha/beta hydrolase fold; Belongs to the AB hydrolase superfamily. MetX family.
       0.568
Rvan_2088
PFAM: protein of unknown function DUF938; KEGG: bid:Bind_1301 hypothetical protein.
       0.498
Rvan_2087
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: msl:Msil_2480 short-chain dehydrogenase/reductase SDR.
       0.431
Rvan_2086
KEGG: msl:Msil_2481 hypothetical protein.
       0.414
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.