STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2099KEGG: oca:OCAR_7278 hypothetical protein. (347 aa)    
Predicted Functional Partners:
Rvan_1929
KEGG: oca:OCAR_4052 RND superfamily transporter.
  
     0.725
Rvan_0746
PFAM: Patatin; KEGG: nha:Nham_2273 patatin.
  
     0.676
Rvan_1672
KEGG: rpt:Rpal_2206 hypothetical protein.
  
     0.637
Rvan_2346
KEGG: rpt:Rpal_1867 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; UspA domain-containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain.
  
     0.574
Rvan_0384
KEGG: met:M446_5709 hypothetical protein.
  
     0.509
Rvan_2888
KEGG: bja:bll4354 hypothetical protein.
  
     0.485
Rvan_2512
KEGG: smd:Smed_5952 signal transduction histidine kinase; PFAM: response regulator receiver; histidine kinase dimerisation/phosphoacceptor; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein.
  
    0.465
Rvan_2889
KEGG: bja:bll4354 hypothetical protein.
  
     0.465
Rvan_2199
PFAM: CsbD family protein; KEGG: azl:AZL_012380 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
     0.455
Rvan_2678
PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_3645 major facilitator transporter.
  
   
 0.455
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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