Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_2124PFAM: cobalamin B12-binding domain protein; KEGG: mdi:METDI0930 putative coenzyme B12-binding. (294 aa)    
Predicted Functional Partners:
Rvan_0999
KEGG: rpb:RPB_3982 2-vinyl bacteriochlorophyllide hydratase; TIGRFAM: 2-vinyl bacteriochlorophyllide hydratase; PFAM: 2-vinyl bacteriochlorophyllide hydratase.
 
  
 0.805
Rvan_1001
KEGG: rce:RC1_2118 transcriptional regulator CrtJ (homologous to PpsR); TIGRFAM: transcriptional regulator PpsR; PAS sensor protein; PFAM: helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein.
 
   
 0.803
Rvan_0209
KEGG: msl:Msil_2051 chlorophyll synthesis pathway, BchC; TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase GroES domain protein.
 
  
 0.787
Rvan_0992
KEGG: bbt:BBta_6411 reaction center protein H chain (photosynthetic reaction center H subunit); TIGRFAM: photosynthetic reaction center H subunit; PFAM: Photosynthetic reaction centre H subunit; PRC-barrel domain protein.
 
     0.783
Rvan_0215
Antenna complex alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
   
 0.779
Rvan_0214
Antenna complex alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
   
 0.778
Rvan_0990
KEGG: rce:RC1_2107 photosynthetic complex assembly protein PuhC, putative.
 
     0.774
Rvan_0991
KEGG: rru:Rru_A0616 photosynthetic complex assembly protein.
 
     0.767
Rvan_0993
PFAM: PUCC protein; KEGG: rpa:RPA1547 photosynthetic complex (LH1) assembly protein LhaA.
 
     0.766
bchN
Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
    0.763
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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