Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_2125PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: rpc:RPC_1245 coenzyme F420 hydrogenase/dehydrogenase beta subunit-like. (417 aa)    
Predicted Functional Partners:
Rvan_0965
PFAM: nickel-dependent hydrogenase large subunit; KEGG: azo:azo3787 ferredoxin hydrogenase, large chain; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
 
 0.765
Rvan_0983
PFAM: nickel-dependent hydrogenase large subunit; KEGG: azo:azo3808 ferredoxin hydrogenase, large subunit.
  
 
 0.765
Rvan_1002
KEGG: mch:Mchl_5287 bacteriochlorophyll/chlorophyll a synthase; TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase.
  
   
 0.697
bchN
Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
    0.673
bchB
Light-independent protochlorophyllide reductase, B subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
    0.664
Rvan_0994
TIGRFAM: magnesium protoporphyrin O-methyltransferase; KEGG: rce:RC1_2111 Mg-protoporphyrin IX methyl transferase; PFAM: Magnesium-protoporphyrin IX methyltransferase domain protein.
 
   
 0.659
Rvan_2327
PFAM: PUCC protein; KEGG: rpc:RPC_1240 PucC protein.
  
    0.647
Rvan_1003
PFAM: PUCC protein; KEGG: met:M446_3713 PucC protein.
  
    0.643
Rvan_1004
KEGG: rce:RC1_2080 geranylgeranyl reductase BchP; TIGRFAM: geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase.
  
    0.631
Rvan_0993
PFAM: PUCC protein; KEGG: rpa:RPA1547 photosynthetic complex (LH1) assembly protein LhaA.
  
    0.592
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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