STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2139PFAM: ribosomal RNA adenine methylase transferase; KEGG: azl:AZL_c04160 putative ribosomal RNA adenine methylase transferase. (207 aa)    
Predicted Functional Partners:
psd
Phosphatidylserine decarboxylase related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
 
  
 0.934
Rvan_1366
Phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
 0.918
Rvan_3372
KEGG: pla:Plav_2189 phosphatidylethanolamine N-methyltransferase; PFAM: Methyltransferase type 11.
     
 0.903
Rvan_2387
KEGG: rpt:Rpal_2218 CDP-diacylglycerol/serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.872
Rvan_1684
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: mes:Meso_3708 glucose-methanol-choline oxidoreductase.
     
  0.800
Rvan_0337
PFAM: protein of unknown function DUF985; KEGG: gdj:Gdia_0454 protein of unknown function DUF985.
  
     0.426
Rvan_2140
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: mdi:METDI5003 putative long-chain fatty acid outer membrane transporter (FadL).
       0.425
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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