STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2145PFAM: metallophosphoesterase; KEGG: msl:Msil_0843 metallophosphoesterase. (305 aa)    
Predicted Functional Partners:
Rvan_2144
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rpt:Rpal_4489 pyridoxal-5'-phosphate-dependent protein beta subunit.
       0.678
Rvan_2142
KEGG: bid:Bind_0115 metallophosphoesterase; manually curated; PFAM: metallophosphoesterase.
     
 0.585
Rvan_2146
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ErfK/YbiS/YcfS/YnhG family protein.
 
     0.573
Rvan_2143
PFAM: glycosyl transferase group 1; KEGG: mlo:mlr2668 glycosyl transferase.
       0.572
Rvan_2564
KEGG: bja:blr6884 flagellar basal body rod protein FlgF; TIGRFAM: flagellar basal-body rod protein FlgF; flagellar hook-basal body protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; Belongs to the flagella basal body rod proteins family.
    
   0.435
Rvan_1242
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: rsp:RSP_4069 caspase-1, P20.
 
     0.423
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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