STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2146PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ErfK/YbiS/YcfS/YnhG family protein. (139 aa)    
Predicted Functional Partners:
Rvan_0260
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpb:RPB_2782 hypothetical protein.
  
     0.640
Rvan_1938
Hypothetical protein; Manually curated; KEGG: oca:OCAR_4675 hypothetical protein.
  
     0.573
Rvan_2145
PFAM: metallophosphoesterase; KEGG: msl:Msil_0843 metallophosphoesterase.
 
     0.573
Rvan_0909
KEGG: met:M446_2502 hypothetical protein.
  
     0.552
Rvan_0922
KEGG: rpc:RPC_4252 hypothetical protein.
 
     0.508
Rvan_0892
PFAM: Phasin; KEGG: mpo:Mpop_2492 phasin.
  
     0.505
Rvan_3523
PFAM: Conserved hypothetical protein CHP02301; KEGG: rpt:Rpal_1260 hypothetical protein.
  
     0.502
Rvan_2144
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rpt:Rpal_4489 pyridoxal-5'-phosphate-dependent protein beta subunit.
 
     0.495
Rvan_2349
PFAM: protein of unknown function DUF1214; KEGG: msl:Msil_1663 protein of unknown function DUF1214.
  
     0.458
Rvan_1672
KEGG: rpt:Rpal_2206 hypothetical protein.
  
     0.425
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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