STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2170KEGG: pla:Plav_3493 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat-containing protein; SMART: Pyrrolo-quinoline quinone beta-propeller repeat. (472 aa)    
Predicted Functional Partners:
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.972
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.957
bamA-2
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.952
Rvan_0880
Hypothetical protein; KEGG: rpt:Rpal_3474 SurA domain.
   
 
 0.861
der
Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.831
Rvan_1305
KEGG: msl:Msil_0656 SmpA/OmlA domain protein; manually curated; PFAM: SmpA/OmlA domain-containing protein.
    
 
 0.826
Rvan_2169
KEGG: mes:Meso_0691 hypothetical protein.
       0.800
Rvan_0621
KEGG: azl:AZL_009640 thiamine-phosphate pyrophosphorylase.
  
     0.740
Rvan_1306
KEGG: pla:Plav_3330 hypothetical protein.
  
     0.647
Rvan_1191
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pla:Plav_0754 lysine exporter protein LysE/YggA.
  
     0.628
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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