Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_2174KEGG: rce:RC1_3882 hypothetical protein. (157 aa)    
Predicted Functional Partners:
Rvan_2175
KEGG: bid:Bind_2214 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
 
   
 0.764
Rvan_2503
PFAM: cysteine-rich small domain; KEGG: rpd:RPD_2921 hypothetical protein.
  
     0.618
Rvan_2173
PFAM: aldo/keto reductase; KEGG: aldo/keto reductase.
       0.490
Rvan_1644
KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin); PFAM: glutamine amidotransferase class-II; glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein.
      
 0.478
Rvan_0727
KEGG: bra:BRADO1653 4-vinyl protochlorophyllide reductase; TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase 4VR.
  
    0.467
Rvan_2514
PFAM: protein of unknown function DUF1008; KEGG: avi:Avi_2731 hypothetical protein.
  
     0.448
Rvan_1970
KEGG: rpc:RPC_0252 ribulose-bisphosphate carboxylase; PFAM: ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase, large subunit-like; Belongs to the RuBisCO large chain family.
  
     0.443
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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