Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2175KEGG: bid:Bind_2214 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR. (152 aa)    
Predicted Functional Partners:
Rvan_2174
KEGG: rce:RC1_3882 hypothetical protein.
 
   
 0.764
Rvan_2176
KEGG: xau:Xaut_4303 FmdB family regulatory protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB.
       0.519
Rvan_2756
Regulatory protein MarR; KEGG: mdi:METDI4463 transcriptional regulator (MarR family); PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
     0.497
Rvan_1644
KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin); PFAM: glutamine amidotransferase class-II; glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein.
      
 0.428
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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