Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Rvan_2178PFAM: Peptidase M23; KEGG: bbt:BBta_1196 putative metalloendopeptidase. (666 aa)    
Predicted Functional Partners:
Rvan_2350
TIGRFAM: penicillin-binding protein, 1A family; KEGG: avi:Avi_1323 penicillin binding protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
  
   
 0.682
Rvan_3066
TIGRFAM: penicillin-binding protein, 1A family; KEGG: rpd:RPD_2444 penicillin-binding protein 1A; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
 
   
 0.680
Rvan_3247
TIGRFAM: signal peptidase I; KEGG: xau:Xaut_3880 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Belongs to the peptidase S26 family.
 
  
 0.639
Rvan_2277
KEGG: nha:Nham_0227 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
  
   
 0.626
Rvan_2197
PFAM: periplasmic solute binding protein; KEGG: ara:Arad_2765 zinc uptake ABC transporter.
  
  
 0.545
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
   
 0.515
Rvan_3259
PFAM: Peptidase M23; KEGG: nha:Nham_0524 peptidase M23B.
 
   
 0.505
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
   
 0.479
Rvan_2117
PFAM: cell cycle protein; KEGG: bov:BOV_1389 cell division protein FtsW; Belongs to the SEDS family.
 
  
 0.476
Rvan_2646
PFAM: Lytic transglycosylase catalytic; KEGG: met:M446_0698 lytic transglycosylase catalytic.
 
   
 0.432
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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