STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2178PFAM: Peptidase M23; KEGG: bbt:BBta_1196 putative metalloendopeptidase. (666 aa)    
Predicted Functional Partners:
Rvan_3066
TIGRFAM: penicillin-binding protein, 1A family; KEGG: rpd:RPD_2444 penicillin-binding protein 1A; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
 
   
 0.687
Rvan_2350
TIGRFAM: penicillin-binding protein, 1A family; KEGG: avi:Avi_1323 penicillin binding protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
  
   
 0.678
Rvan_3247
TIGRFAM: signal peptidase I; KEGG: xau:Xaut_3880 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Belongs to the peptidase S26 family.
 
  
 0.622
Rvan_2277
KEGG: nha:Nham_0227 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
  
   
 0.621
Rvan_2197
PFAM: periplasmic solute binding protein; KEGG: ara:Arad_2765 zinc uptake ABC transporter.
 
  
 0.539
Rvan_3259
PFAM: Peptidase M23; KEGG: nha:Nham_0524 peptidase M23B.
 
   
 0.520
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
  
 0.513
Rvan_2117
PFAM: cell cycle protein; KEGG: bov:BOV_1389 cell division protein FtsW; Belongs to the SEDS family.
 
  
 0.484
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
   
 0.473
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
 
   
 0.430
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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