STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2191PFAM: Uncharacterised protein family UPF0283; KEGG: atc:AGR_C_2505 hypothetical protein. (400 aa)    
Predicted Functional Partners:
Rvan_2190
PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: rpb:RPB_3941 hypothetical protein.
 
  
 0.993
Rvan_1371
KEGG: oan:Oant_2153 hypothetical protein.
  
     0.712
Rvan_1740
PFAM: Invasion associated locus B family protein; KEGG: oca:OCAR_4683 invasion associated locus B.
  
     0.709
Rvan_0922
KEGG: rpc:RPC_4252 hypothetical protein.
  
     0.692
Rvan_0917
PFAM: protein of unknown function DUF1150; KEGG: oca:OCAR_4463 hypothetical protein.
  
     0.682
Rvan_2488
PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: ara:Arad_0300 penicillin-insensitive murein endopeptidase.
  
     0.663
Rvan_3366
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: azc:AZC_0957 ErfK/YbiS/YcfS/YnhG precursor.
  
     0.640
Rvan_0483
PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: rle:RL0184 penicillin-insensitive murein endopeptidase.
  
     0.623
Rvan_3397
KEGG: bid:Bind_0732 hypothetical protein.
  
     0.623
Rvan_0447
KEGG: rpe:RPE_1474 hypothetical protein.
  
     0.610
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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